Dca6556.1
Annotation
- 2-exons
- f-1
- sp|A5BPL3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_028741#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold1258)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca6556.1 |
21 |
357 |
368 |
30.97 |
337 |
32 |
3e-48
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BPL3_VITVI |
19 |
371 |
1262 |
27.97 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca6556.1 |
19 |
228 |
368 |
19.02 |
210 |
33 |
4e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
14 |
225 |
237 |
89.45 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1258 |
Augustus |
mRNA |
43975 |
45388 |
. |
- |
. |
ID=Dca6556.1;Parent=Dca6556 |
| scaffold1258 |
Augustus |
exon |
43975 |
44015 |
. |
- |
. |
ID=Dca6556.1.exon1;Parent=Dca6556.1 |
| scaffold1258 |
Augustus |
exon |
44323 |
45388 |
. |
- |
. |
ID=Dca6556.1.exon2;Parent=Dca6556.1 |
