Dca6560.1
Annotation
- 2-exons
- f-1
- sp|A5ALL8_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_001215#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold1258)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca6560.1 |
18 |
656 |
669 |
33.33 |
639 |
33 |
3e-91
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5ALL8_VITVI |
47 |
697 |
1535 |
42.41 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca6560.1 |
34 |
195 |
669 |
7.92 |
162 |
33 |
2e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
41 |
205 |
237 |
69.62 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1258 |
Augustus |
mRNA |
60726 |
62808 |
. |
+ |
. |
ID=Dca6560.1;Parent=Dca6560 |
| scaffold1258 |
Augustus |
exon |
60726 |
61314 |
. |
+ |
. |
ID=Dca6560.1.exon1;Parent=Dca6560.1 |
| scaffold1258 |
Augustus |
exon |
61388 |
62808 |
. |
+ |
. |
ID=Dca6560.1.exon2;Parent=Dca6560.1 |
