Carnation DB

Dca8339.1

Annotation

9-exons
f-1
sp|F6H758_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_16s0098g01130#unknown#0F0P0C
Os08t0543600-01 Alpha-isopropylmalate/homocitrate synthase, conserved site domain containing protein.
Repeat List (scaffold135)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8339.1	75	227	402	23.88	153	49	5e-42
Target_name	Start	End	Length	Cov(%)
sp\|F6H758_VITVI	142	338	875	22.51

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8339.1	79	236	402	23.13	158	46	3e-38
Target_name	Start	End	Length	Cov(%)
AT5G53620.1	140	339	682	29.32

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold135	Augustus	mRNA	57101	62878	.	+	.	ID=Dca8339.1;Parent=Dca8339
scaffold135	Augustus	exon	57101	57324	.	+	.	ID=Dca8339.1.exon1;Parent=Dca8339.1
scaffold135	Augustus	exon	57505	57574	.	+	.	ID=Dca8339.1.exon2;Parent=Dca8339.1
scaffold135	Augustus	exon	57675	57730	.	+	.	ID=Dca8339.1.exon3;Parent=Dca8339.1
scaffold135	Augustus	exon	57901	58066	.	+	.	ID=Dca8339.1.exon4;Parent=Dca8339.1
scaffold135	Augustus	exon	58386	58600	.	+	.	ID=Dca8339.1.exon5;Parent=Dca8339.1
scaffold135	Augustus	exon	61091	61155	.	+	.	ID=Dca8339.1.exon6;Parent=Dca8339.1
scaffold135	Augustus	exon	61375	61454	.	+	.	ID=Dca8339.1.exon7;Parent=Dca8339.1
scaffold135	Augustus	exon	61793	61870	.	+	.	ID=Dca8339.1.exon8;Parent=Dca8339.1
scaffold135	Augustus	exon	62624	62878	.	+	.	ID=Dca8339.1.exon9;Parent=Dca8339.1