Carnation DB

Dca9319.1

Annotation

6-exons
f-1
sp|B9I131_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_727886#unknown#0F0P0C
AT4G18975.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10392170-10393665 REVERSE LENGTH=287
Repeat List (scaffold14)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9319.1	12	242	249	66.66	231	72	2e-96
Target_name	Start	End	Length	Cov(%)
sp\|B9I131_POPTR	34	264	272	84.92

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9319.1	36	245	249	58.23	210	70	4e-86
Target_name	Start	End	Length	Cov(%)
AT4G18975.1	73	282	287	73.17

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold14	Augustus	mRNA	254196	256906	.	+	.	ID=Dca9319.1;Parent=Dca9319
scaffold14	Augustus	exon	254196	254243	.	+	.	ID=Dca9319.1.exon1;Parent=Dca9319.1
scaffold14	Augus-PASA	exon	254363	254412	.	+	.	ID=Dca9319.1.exon2;Parent=Dca9319.1
scaffold14	Augus-PASA	exon	254702	254804	.	+	.	ID=Dca9319.1.exon3;Parent=Dca9319.1
scaffold14	Augus-PASA	exon	254922	255065	.	+	.	ID=Dca9319.1.exon4;Parent=Dca9319.1
scaffold14	Augus-PASA	exon	255612	255824	.	+	.	ID=Dca9319.1.exon5;Parent=Dca9319.1
scaffold14	Augus-PASA	exon	256715	256906	.	+	.	ID=Dca9319.1.exon6;Parent=Dca9319.1