Carnation DB

Dca9733.1

Annotation

5-exons
f-1
sp|F6HZK8_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_07s0005g03500#unknown#0F0P0C
Os04t0102600-01 Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit).
Repeat List (scaffold142)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9733.1	1	204	205	68.29	204	69	6e-82
Target_name	Start	End	Length	Cov(%)
sp\|F6HZK8_VITVI	1	204	205	99.51

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9733.1	1	205	205	63.9	205	64	3e-75
Target_name	Start	End	Length	Cov(%)
Os04t0102600-01	1	206	207	99.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold142	Augus-PASA	mRNA	157008	161880	.	+	.	ID=Dca9733.1;Parent=Dca9733
scaffold142	Augus-PASA	exon	157008	157079	.	+	.	ID=Dca9733.1.exon1;Parent=Dca9733.1
scaffold142	Augus-PASA	exon	158698	158870	.	+	.	ID=Dca9733.1.exon2;Parent=Dca9733.1
scaffold142	Augus-PASA	exon	161077	161260	.	+	.	ID=Dca9733.1.exon3;Parent=Dca9733.1
scaffold142	Augus-PASA	exon	161590	161696	.	+	.	ID=Dca9733.1.exon4;Parent=Dca9733.1
scaffold142	Augus-PASA	exon	161799	161880	.	+	.	ID=Dca9733.1.exon5;Parent=Dca9733.1