Dca9936.1
Annotation
- 3-exons
- f-1
- sp|B9HC28_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_560099#GO:0008168#1F0P0C
- AT5G47680.1 | Symbols: TRM10, AtTRM | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19316329-19317467 REVERSE LENGTH=344
- Repeat List (scaffold143)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9936.1 |
1 |
320 |
353 |
62.88 |
320 |
69 |
2e-117
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9HC28_POPTR |
1 |
320 |
328 |
97.56 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9936.1 |
20 |
316 |
353 |
57.5 |
297 |
68 |
1e-101
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G47680.1 |
24 |
320 |
344 |
86.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold143 |
Augustus |
mRNA |
236886 |
239851 |
. |
+ |
. |
ID=Dca9936.1;Parent=Dca9936 |
| scaffold143 |
Augustus |
exon |
236886 |
237299 |
. |
+ |
. |
ID=Dca9936.1.exon1;Parent=Dca9936.1 |
| scaffold143 |
Augustus |
exon |
238435 |
238794 |
. |
+ |
. |
ID=Dca9936.1.exon2;Parent=Dca9936.1 |
| scaffold143 |
Augustus |
exon |
239564 |
239851 |
. |
+ |
. |
ID=Dca9936.1.exon3;Parent=Dca9936.1 |
