Carnation DB

Dca10164.1

Annotation

5-exons
f-1
sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
Repeat List (scaffold14415)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10164.1	13	431	1083	14.31	419	31	5e-48
Target_name	Start	End	Length	Cov(%)
sp\|Q2QSG2_ORYSJ	179	684	1597	31.68

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10164.1	661	1059	1083	16.06	399	40	9e-87
Target_name	Start	End	Length	Cov(%)
AT4G23160.1	135	578	1262	35.18

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold14415	Augustus	mRNA	296	4938	.	+	.	ID=Dca10164.1;Parent=Dca10164
scaffold14415	Augustus	exon	296	1028	.	+	.	ID=Dca10164.1.exon1;Parent=Dca10164.1
scaffold14415	Augustus	exon	1525	2453	.	+	.	ID=Dca10164.1.exon2;Parent=Dca10164.1
scaffold14415	Augustus	exon	3144	3519	.	+	.	ID=Dca10164.1.exon3;Parent=Dca10164.1
scaffold14415	Augustus	exon	3599	3915	.	+	.	ID=Dca10164.1.exon4;Parent=Dca10164.1
scaffold14415	Augustus	exon	4042	4938	.	+	.	ID=Dca10164.1.exon5;Parent=Dca10164.1