Carnation DB

Dca10304.1

Annotation

7-exons
f-1
sp|A9PGP1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_565403#unknown#0F0P0C
sp|G7K485_MEDTR#SAM domain family protein#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_5g035810#unknown#0F0P0C
Repeat List (scaffold145)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10304.1	5	192	467	16.7	188	40	8e-19
Target_name	Start	End	Length	Cov(%)
sp\|A9PGP1_POPTR	4	176	330	52.42

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10304.1	2	193	467	16.27	192	37	1e-10
Target_name	Start	End	Length	Cov(%)
Os04t0465000-01	4	204	347	57.92

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold145	Augustus	mRNA	110148	116592	.	-	.	ID=Dca10304.1;Parent=Dca10304
scaffold145	Augustus	exon	110148	110204	.	-	.	ID=Dca10304.1.exon1;Parent=Dca10304.1
scaffold145	Augustus	exon	111318	111380	.	-	.	ID=Dca10304.1.exon2;Parent=Dca10304.1
scaffold145	Augustus	exon	112575	112655	.	-	.	ID=Dca10304.1.exon3;Parent=Dca10304.1
scaffold145	Augustus	exon	113170	114152	.	-	.	ID=Dca10304.1.exon4;Parent=Dca10304.1
scaffold145	Augus-PASA	exon	114242	114273	.	-	.	ID=Dca10304.1.exon5;Parent=Dca10304.1
scaffold145	Augus-PASA	exon	114466	114596	.	-	.	ID=Dca10304.1.exon6;Parent=Dca10304.1
scaffold145	Augus-PASA	exon	116536	116592	.	-	.	ID=Dca10304.1.exon7;Parent=Dca10304.1