Carnation DB

Dca1047.1

Annotation

5-exons
f-1
sp|Q9ZUF0_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g05980#GO:0003723;GO:0003964;GO:0006278#2F1P0C
Repeat List (scaffold1029)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1047.1	15	826	1387	20.04	812	33	8e-116
Target_name	Start	End	Length	Cov(%)
sp\|Q9ZUF0_ARATH	262	1086	1352	61.02

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1047.1	483	800	1387	7.42	318	33	4e-42
Target_name	Start	End	Length	Cov(%)
Os03t0643433-00	102	419	644	49.37

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1029	Augustus	mRNA	75171	82385	.	+	.	ID=Dca1047.1;Parent=Dca1047
scaffold1029	Augustus	exon	75171	76571	.	+	.	ID=Dca1047.1.exon1;Parent=Dca1047.1
scaffold1029	Augustus	exon	76837	78142	.	+	.	ID=Dca1047.1.exon2;Parent=Dca1047.1
scaffold1029	Augustus	exon	78894	79254	.	+	.	ID=Dca1047.1.exon3;Parent=Dca1047.1
scaffold1029	Augustus	exon	81191	81748	.	+	.	ID=Dca1047.1.exon4;Parent=Dca1047.1
scaffold1029	Augustus	exon	81848	82385	.	+	.	ID=Dca1047.1.exon5;Parent=Dca1047.1