Dca10560.1
Annotation
- 4-exons
- f-1
- sp|Q2QTW2_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g18320#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold14658)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca10560.1 |
4 |
506 |
513 |
42.69 |
503 |
38 |
1e-94
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QTW2_ORYSJ |
11 |
594 |
1226 |
47.63 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca10560.1 |
312 |
480 |
513 |
16.95 |
169 |
52 |
4e-47
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
605 |
769 |
1539 |
10.72 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold14658 |
Augustus |
mRNA |
958 |
3830 |
. |
- |
. |
ID=Dca10560.1;Parent=Dca10560 |
| scaffold14658 |
Augustus |
exon |
958 |
1054 |
. |
- |
. |
ID=Dca10560.1.exon1;Parent=Dca10560.1 |
| scaffold14658 |
Augustus |
exon |
1366 |
1885 |
. |
- |
. |
ID=Dca10560.1.exon2;Parent=Dca10560.1 |
| scaffold14658 |
Augustus |
exon |
2823 |
3057 |
. |
- |
. |
ID=Dca10560.1.exon3;Parent=Dca10560.1 |
| scaffold14658 |
Augustus |
exon |
3141 |
3830 |
. |
- |
. |
ID=Dca10560.1.exon4;Parent=Dca10560.1 |
