Carnation DB

Dca10656.1

Annotation

10-exons
f-1
sp|B9MWQ9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_826952#GO:0003676;GO:0000166#2F0P0C
sp|G5DWY9_SILLA#RNA recognition motif-containing protein#Silene latifolia (White campion) (Bladder campion)#unknown#GO:0003676;GO:0000166#2F0P0C
Repeat List (scaffold147)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10656.1	67	319	319	52.97	253	67	5e-93
Target_name	Start	End	Length	Cov(%)
sp\|B9MWQ9_POPTR	30	281	281	89.67

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10656.1	67	310	319	44.51	244	53	2e-68
Target_name	Start	End	Length	Cov(%)
AT3G13700.1	36	296	296	88.17

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold147	Augus-PASA	mRNA	97469	101227	.	+	.	ID=Dca10656.1;Parent=Dca10656
scaffold147	Augus-PASA	exon	97469	97789	.	+	.	ID=Dca10656.1.exon1;Parent=Dca10656.1
scaffold147	Augus-PASA	exon	99112	99174	.	+	.	ID=Dca10656.1.exon2;Parent=Dca10656.1
scaffold147	Augus-PASA	exon	99287	99368	.	+	.	ID=Dca10656.1.exon3;Parent=Dca10656.1
scaffold147	Augus-PASA	exon	99458	99532	.	+	.	ID=Dca10656.1.exon4;Parent=Dca10656.1
scaffold147	Augus-PASA	exon	99648	99726	.	+	.	ID=Dca10656.1.exon5;Parent=Dca10656.1
scaffold147	Augustus	exon	99900	99945	.	+	.	ID=Dca10656.1.exon6;Parent=Dca10656.1
scaffold147	Augustus	exon	100570	100679	.	+	.	ID=Dca10656.1.exon7;Parent=Dca10656.1
scaffold147	Augustus	exon	100799	100868	.	+	.	ID=Dca10656.1.exon8;Parent=Dca10656.1
scaffold147	Augustus	exon	101025	101107	.	+	.	ID=Dca10656.1.exon9;Parent=Dca10656.1
scaffold147	Augustus	exon	101197	101227	.	+	.	ID=Dca10656.1.exon10;Parent=Dca10656.1
scaffold147	Augus-PASA	mRNA	97469	101227	.	+	.	ID=Dca10656.2;Parent=Dca10656
scaffold147	Augus-PASA	exon	97469	97789	.	+	.	ID=Dca10656.2.exon1;Parent=Dca10656.2
scaffold147	Augus-PASA	exon	99112	99174	.	+	.	ID=Dca10656.2.exon2;Parent=Dca10656.2
scaffold147	Augus-PASA	exon	99287	99368	.	+	.	ID=Dca10656.2.exon3;Parent=Dca10656.2
scaffold147	Augus-PASA	exon	99458	99532	.	+	.	ID=Dca10656.2.exon4;Parent=Dca10656.2
scaffold147	Augus-PASA	exon	99648	99726	.	+	.	ID=Dca10656.2.exon5;Parent=Dca10656.2
scaffold147	Augustus	exon	99900	99939	.	+	.	ID=Dca10656.2.exon6;Parent=Dca10656.2
scaffold147	Augustus	exon	100570	100679	.	+	.	ID=Dca10656.2.exon7;Parent=Dca10656.2
scaffold147	Augustus	exon	100799	100868	.	+	.	ID=Dca10656.2.exon8;Parent=Dca10656.2
scaffold147	Augustus	exon	101025	101107	.	+	.	ID=Dca10656.2.exon9;Parent=Dca10656.2
scaffold147	Augustus	exon	101197	101227	.	+	.	ID=Dca10656.2.exon10;Parent=Dca10656.2