Dca10780.1
Annotation
- 2-exons
- f-1
- sp|Q2QRY4_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25980#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold14769)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca10780.1 |
42 |
1164 |
1165 |
44.63 |
1123 |
44 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRY4_ORYSJ |
283 |
1454 |
1541 |
76.05 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca10780.1 |
350 |
444 |
1165 |
2.4 |
95 |
30 |
2e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
413 |
507 |
1539 |
6.17 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold14769 |
Augustus |
mRNA |
3528 |
7697 |
. |
- |
. |
ID=Dca10780.1;Parent=Dca10780 |
| scaffold14769 |
Augustus |
exon |
3528 |
5485 |
. |
- |
. |
ID=Dca10780.1.exon1;Parent=Dca10780.1 |
| scaffold14769 |
Augustus |
exon |
6161 |
7697 |
. |
- |
. |
ID=Dca10780.1.exon2;Parent=Dca10780.1 |
