Carnation DB

Dca11088.1

Annotation

12-exons
f-1
sp|D7KHG1_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_473395#GO:0005634;GO:0003677;GO:0006351#1F1P1C
AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation factor (TFIIS) family protein | chr1:11559146-11561786 REVERSE LENGTH=502
Repeat List (scaffold1493)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11088.1	1	521	765	39.73	521	57	4e-146
Target_name	Start	End	Length	Cov(%)
sp\|D7KHG1_ARALL	1	502	503	99.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11088.1	1	521	765	38.95	521	56	5e-145
Target_name	Start	End	Length	Cov(%)
AT1G32130.1	1	501	502	99.8

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1493	Augustus	mRNA	27115	33437	.	-	.	ID=Dca11088.1;Parent=Dca11088
scaffold1493	Augustus	exon	27115	27853	.	-	.	ID=Dca11088.1.exon1;Parent=Dca11088.1
scaffold1493	Augustus	exon	28900	28988	.	-	.	ID=Dca11088.1.exon2;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	29282	29435	.	-	.	ID=Dca11088.1.exon3;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	29530	29586	.	-	.	ID=Dca11088.1.exon4;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	29719	29807	.	-	.	ID=Dca11088.1.exon5;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	30443	30520	.	-	.	ID=Dca11088.1.exon6;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	30610	30672	.	-	.	ID=Dca11088.1.exon7;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	30754	30883	.	-	.	ID=Dca11088.1.exon8;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	30988	31199	.	-	.	ID=Dca11088.1.exon9;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	31557	31664	.	-	.	ID=Dca11088.1.exon10;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	32741	33299	.	-	.	ID=Dca11088.1.exon11;Parent=Dca11088.1
scaffold1493	Augus-PASA	exon	33418	33437	.	-	.	ID=Dca11088.1.exon12;Parent=Dca11088.1