Carnation DB

Dca11163.1

Annotation

7-exons
f-1
sp|D7MDA7_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_491904#unknown#0F0P0C
AT4G28590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331
Repeat List (scaffold14986)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11163.1	71	410	444	38.96	340	50	4e-78
Target_name	Start	End	Length	Cov(%)
sp\|D7MDA7_ARALL	51	336	336	85.11

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11163.1	34	410	444	40.54	377	47	3e-79
Target_name	Start	End	Length	Cov(%)
AT4G28590.1	11	331	331	96.97

seqname	source	feature	start	end	score	strand	frame	group
scaffold14986	Augustus	mRNA	2441	4992	.	+	.	ID=Dca11163.1;Parent=Dca11163
scaffold14986	Augustus	exon	2441	3324	.	+	.	ID=Dca11163.1.exon1;Parent=Dca11163.1
scaffold14986	Augustus	exon	3485	3559	.	+	.	ID=Dca11163.1.exon2;Parent=Dca11163.1
scaffold14986	Augustus	exon	3677	3725	.	+	.	ID=Dca11163.1.exon3;Parent=Dca11163.1
scaffold14986	Augustus	exon	3870	3981	.	+	.	ID=Dca11163.1.exon4;Parent=Dca11163.1
scaffold14986	Augustus	exon	4284	4363	.	+	.	ID=Dca11163.1.exon5;Parent=Dca11163.1
scaffold14986	Augustus	exon	4475	4493	.	+	.	ID=Dca11163.1.exon6;Parent=Dca11163.1
scaffold14986	Augustus	exon	4877	4992	.	+	.	ID=Dca11163.1.exon7;Parent=Dca11163.1