Dca11288.1
Annotation
- 2-exons
- f-1
- sp|Q5MG92_IPOBA#Putative retrotransposon polyprotein#Ipomoea batatas (Sweet potato) (Convolvulus batatas)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold15004)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca11288.1 |
90 |
219 |
220 |
36.81 |
130 |
61 |
3e-38
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q5MG92_IPOBA |
584 |
715 |
1358 |
9.72 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca11288.1 |
127 |
216 |
220 |
15.45 |
90 |
38 |
1e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
214 |
301 |
707 |
12.44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold15004 |
Augustus |
mRNA |
1779 |
3778 |
. |
+ |
. |
ID=Dca11288.1;Parent=Dca11288 |
| scaffold15004 |
Augustus |
exon |
1779 |
2028 |
. |
+ |
. |
ID=Dca11288.1.exon1;Parent=Dca11288.1 |
| scaffold15004 |
Augustus |
exon |
3366 |
3778 |
. |
+ |
. |
ID=Dca11288.1.exon2;Parent=Dca11288.1 |
