Carnation DB

Dca11768.1

Annotation

6-exons
f-1
sp|B9HC28_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_560099#GO:0008168#1F0P0C
AT5G47680.1 | Symbols: TRM10, AtTRM | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19316329-19317467 REVERSE LENGTH=344
Repeat List (scaffold1529)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11768.1	1	373	404	46.28	373	50	1e-75
Target_name	Start	End	Length	Cov(%)
sp\|B9HC28_POPTR	1	319	328	97.25

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11768.1	24	370	404	42.07	347	49	2e-63
Target_name	Start	End	Length	Cov(%)
AT5G47680.1	24	325	344	87.79

seqname	source	feature	start	end	score	strand	frame	group
scaffold1529	Augustus	mRNA	73618	76686	.	-	.	ID=Dca11768.1;Parent=Dca11768
scaffold1529	Augustus	exon	73618	73905	.	-	.	ID=Dca11768.1.exon1;Parent=Dca11768.1
scaffold1529	Augustus	exon	74746	74915	.	-	.	ID=Dca11768.1.exon2;Parent=Dca11768.1
scaffold1529	Augustus	exon	75003	75105	.	-	.	ID=Dca11768.1.exon3;Parent=Dca11768.1
scaffold1529	Augustus	exon	75212	75293	.	-	.	ID=Dca11768.1.exon4;Parent=Dca11768.1
scaffold1529	Augustus	exon	75390	75535	.	-	.	ID=Dca11768.1.exon5;Parent=Dca11768.1
scaffold1529	Augustus	exon	76261	76686	.	-	.	ID=Dca11768.1.exon6;Parent=Dca11768.1