Dca12119.1
Annotation
- 3-exons
- f-3
- sp|Q7X6A8_ARATH#Putative uncharacterized protein At5g57060#Arabidopsis thaliana (Mouse-ear cress)#OrderedLocusNames=At5g57060#GO:0016021;GO:0005840;GO:0003735;GO:0019835;GO:0050829;GO:0006412#1F3P2C
- AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23090666-23091796 FORWARD LENGTH=137
- Repeat List (scaffold155)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca12119.1 |
3 |
96 |
99 |
64.64 |
94 |
69 |
1e-34
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7X6A8_ARATH |
39 |
132 |
137 |
68.61 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca12119.1 |
3 |
96 |
99 |
64.64 |
94 |
69 |
6e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G57060.1 |
39 |
132 |
137 |
68.61 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold155 |
Augus-PASA |
mRNA |
208077 |
208945 |
. |
- |
. |
ID=Dca12119.1;Parent=Dca12119 |
| scaffold155 |
Augus-PASA |
exon |
208077 |
208133 |
. |
- |
. |
ID=Dca12119.1.exon1;Parent=Dca12119.1 |
| scaffold155 |
Augus-PASA |
exon |
208624 |
208741 |
. |
- |
. |
ID=Dca12119.1.exon2;Parent=Dca12119.1 |
| scaffold155 |
Augustus |
exon |
208819 |
208945 |
. |
- |
. |
ID=Dca12119.1.exon3;Parent=Dca12119.1 |
