Carnation DB

Dca12296.1

Annotation

5-exons
f-1
sp|D7SKJ4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_06s0004g04340#GO:0003676;GO:0000166#2F0P0C
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:24140235-24141504 FORWARD LENGTH=245
Repeat List (scaffold156)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12296.1	1	246	254	62.59	246	64	4e-71
Target_name	Start	End	Length	Cov(%)
sp\|D7SKJ4_VITVI	1	242	243	99.58

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12296.1	1	246	254	51.96	246	51	9e-55
Target_name	Start	End	Length	Cov(%)
AT5G59950.5	1	244	245	99.59

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold156	Augus-PASA	mRNA	196827	198788	.	+	.	ID=Dca12296.1;Parent=Dca12296
scaffold156	Augus-PASA	exon	196827	197012	.	+	.	ID=Dca12296.1.exon1;Parent=Dca12296.1
scaffold156	Augus-PASA	exon	197133	197279	.	+	.	ID=Dca12296.1.exon2;Parent=Dca12296.1
scaffold156	Augus-PASA	exon	198001	198069	.	+	.	ID=Dca12296.1.exon3;Parent=Dca12296.1
scaffold156	Augus-PASA	exon	198157	198341	.	+	.	ID=Dca12296.1.exon4;Parent=Dca12296.1
scaffold156	Augus-PASA	exon	198611	198788	.	+	.	ID=Dca12296.1.exon5;Parent=Dca12296.1