Carnation DB

Dca12417.1

Annotation

11-exons
f-1
sp|D7SZW3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0034g02010#GO:0000775;GO:0007067#0F1P1C
AT1G61000.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits to 29793 proteins in 2070 species: Archae - 902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses - 158; Other Eukaryotes - 12412 (source: NCBI BLink). | chr1:22471096-22474046 REVERSE LENGTH=440
Repeat List (scaffold1568)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12417.1	1	440	448	52.45	440	54	2e-120
Target_name	Start	End	Length	Cov(%)
sp\|D7SZW3_VITVI	1	441	453	97.35

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12417.1	1	431	448	41.07	431	43	3e-90
Target_name	Start	End	Length	Cov(%)
AT1G61000.1	1	433	440	98.4

seqname	source	feature	start	end	score	strand	frame	group
scaffold1568	Augus-PASA	mRNA	46226	55222	.	-	.	ID=Dca12417.1;Parent=Dca12417
scaffold1568	Augus-PASA	exon	46226	46303	.	-	.	ID=Dca12417.1.exon1;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	48421	48516	.	-	.	ID=Dca12417.1.exon2;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	48700	48857	.	-	.	ID=Dca12417.1.exon3;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	48947	49058	.	-	.	ID=Dca12417.1.exon4;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	50661	50714	.	-	.	ID=Dca12417.1.exon5;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	51676	51783	.	-	.	ID=Dca12417.1.exon6;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	53180	53269	.	-	.	ID=Dca12417.1.exon7;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	53744	53923	.	-	.	ID=Dca12417.1.exon8;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	54033	54123	.	-	.	ID=Dca12417.1.exon9;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	54737	54955	.	-	.	ID=Dca12417.1.exon10;Parent=Dca12417.1
scaffold1568	Augus-PASA	exon	55062	55222	.	-	.	ID=Dca12417.1.exon11;Parent=Dca12417.1