Dca12552.1
Annotation
- 3-exons
- f-970
- sp|Q9ZPU4_ARATH#Putative retroelement pol polyprotein#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g13940#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1576)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca12552.1 |
1 |
130 |
135 |
56.29 |
130 |
59 |
2e-38
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9ZPU4_ARATH |
1368 |
1497 |
1501 |
8.66 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca12552.1 |
1 |
88 |
135 |
38.51 |
88 |
60 |
1e-27
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
467 |
554 |
1262 |
6.97 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1576 |
Augustus |
mRNA |
96297 |
98835 |
. |
+ |
. |
ID=Dca12552.1;Parent=Dca12552 |
| scaffold1576 |
Augustus |
exon |
96297 |
96384 |
. |
+ |
. |
ID=Dca12552.1.exon1;Parent=Dca12552.1 |
| scaffold1576 |
Augustus |
exon |
97163 |
98035 |
. |
+ |
. |
ID=Dca12552.1.exon2;Parent=Dca12552.1 |
| scaffold1576 |
Augustus |
exon |
98420 |
98835 |
. |
+ |
. |
ID=Dca12552.1.exon3;Parent=Dca12552.1 |
