Carnation DB

Dca12565.1

Annotation

6-exons
f-1
sp|B9RU60_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1632320#unknown#0F0P0C
AT2G40820.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr2:17036768-17039474 REVERSE LENGTH=492
Repeat List (scaffold15772)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12565.1	47	193	253	37.54	147	49	7e-39
Target_name	Start	End	Length	Cov(%)
sp\|B9RU60_RICCO	219	412	509	38.11

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12565.1	47	175	253	28.85	129	43	6e-32
Target_name	Start	End	Length	Cov(%)
AT2G40820.1	221	391	492	34.75

seqname	source	feature	start	end	score	strand	frame	group
scaffold15772	Augustus	mRNA	8156	10151	.	-	.	ID=Dca12565.1;Parent=Dca12565
scaffold15772	Augustus	exon	8156	8454	.	-	.	ID=Dca12565.1.exon1;Parent=Dca12565.1
scaffold15772	Augustus	exon	8519	8635	.	-	.	ID=Dca12565.1.exon2;Parent=Dca12565.1
scaffold15772	Augustus	exon	8841	8895	.	-	.	ID=Dca12565.1.exon3;Parent=Dca12565.1
scaffold15772	Augustus	exon	8986	9069	.	-	.	ID=Dca12565.1.exon4;Parent=Dca12565.1
scaffold15772	Augustus	exon	9148	9216	.	-	.	ID=Dca12565.1.exon5;Parent=Dca12565.1
scaffold15772	Augustus	exon	10014	10151	.	-	.	ID=Dca12565.1.exon6;Parent=Dca12565.1