Carnation DB

Dca12610.1

Annotation

13-exons
f-1
sp|G5DXC8_SILLA#26S proteasome regulatory subunit N1#Silene latifolia (White campion) (Bladder campion)#unknown#GO:0000502;GO:0005488;GO:0030234;GO:0042176#2F1P1C
Repeat List (scaffold158)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12610.1	3	511	513	69.98	509	66	0
Target_name	Start	End	Length	Cov(%)
sp\|G5DXC8_SILLA	344	886	886	61.28

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12610.1	3	511	513	64.52	509	61	4e-171
Target_name	Start	End	Length	Cov(%)
AT2G20580.1	350	891	891	60.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold158	Augustus	mRNA	45252	49032	.	-	.	ID=Dca12610.1;Parent=Dca12610
scaffold158	Augustus	exon	45252	45330	.	-	.	ID=Dca12610.1.exon1;Parent=Dca12610.1
scaffold158	Augustus	exon	45510	45688	.	-	.	ID=Dca12610.1.exon2;Parent=Dca12610.1
scaffold158	Augustus	exon	45996	46082	.	-	.	ID=Dca12610.1.exon3;Parent=Dca12610.1
scaffold158	Augustus	exon	46193	46306	.	-	.	ID=Dca12610.1.exon4;Parent=Dca12610.1
scaffold158	Augustus	exon	46403	46462	.	-	.	ID=Dca12610.1.exon5;Parent=Dca12610.1
scaffold158	Augustus	exon	46796	47011	.	-	.	ID=Dca12610.1.exon6;Parent=Dca12610.1
scaffold158	Augustus	exon	47106	47207	.	-	.	ID=Dca12610.1.exon7;Parent=Dca12610.1
scaffold158	Augustus	exon	47334	47555	.	-	.	ID=Dca12610.1.exon8;Parent=Dca12610.1
scaffold158	Augustus	exon	48129	48233	.	-	.	ID=Dca12610.1.exon9;Parent=Dca12610.1
scaffold158	Augustus	exon	48326	48475	.	-	.	ID=Dca12610.1.exon10;Parent=Dca12610.1
scaffold158	Augustus	exon	48577	48693	.	-	.	ID=Dca12610.1.exon11;Parent=Dca12610.1
scaffold158	Augustus	exon	48797	48901	.	-	.	ID=Dca12610.1.exon12;Parent=Dca12610.1
scaffold158	Augustus	exon	49027	49032	.	-	.	ID=Dca12610.1.exon13;Parent=Dca12610.1
scaffold158	Augustus	mRNA	45252	53985	.	-	.	ID=Dca12610.2;Parent=Dca12610
scaffold158	Augustus	exon	45252	45330	.	-	.	ID=Dca12610.2.exon1;Parent=Dca12610.2
scaffold158	Augustus	exon	45510	45688	.	-	.	ID=Dca12610.2.exon2;Parent=Dca12610.2
scaffold158	Augustus	exon	45996	46082	.	-	.	ID=Dca12610.2.exon3;Parent=Dca12610.2
scaffold158	Augustus	exon	46193	46306	.	-	.	ID=Dca12610.2.exon4;Parent=Dca12610.2
scaffold158	Augustus	exon	46403	46462	.	-	.	ID=Dca12610.2.exon5;Parent=Dca12610.2
scaffold158	Augustus	exon	46796	47011	.	-	.	ID=Dca12610.2.exon6;Parent=Dca12610.2
scaffold158	Augustus	exon	47106	47207	.	-	.	ID=Dca12610.2.exon7;Parent=Dca12610.2
scaffold158	Augustus	exon	47334	47555	.	-	.	ID=Dca12610.2.exon8;Parent=Dca12610.2
scaffold158	Augustus	exon	48129	48233	.	-	.	ID=Dca12610.2.exon9;Parent=Dca12610.2
scaffold158	Augustus	exon	48326	48475	.	-	.	ID=Dca12610.2.exon10;Parent=Dca12610.2
scaffold158	Augustus	exon	48577	48693	.	-	.	ID=Dca12610.2.exon11;Parent=Dca12610.2
scaffold158	Augustus	exon	48797	48901	.	-	.	ID=Dca12610.2.exon12;Parent=Dca12610.2
scaffold158	Augustus	exon	49797	49955	.	-	.	ID=Dca12610.2.exon13;Parent=Dca12610.2
scaffold158	Augustus	exon	50436	50510	.	-	.	ID=Dca12610.2.exon14;Parent=Dca12610.2
scaffold158	Augustus	exon	50953	51067	.	-	.	ID=Dca12610.2.exon15;Parent=Dca12610.2
scaffold158	Augustus	exon	51207	51289	.	-	.	ID=Dca12610.2.exon16;Parent=Dca12610.2
scaffold158	Augustus	exon	51509	51574	.	-	.	ID=Dca12610.2.exon17;Parent=Dca12610.2
scaffold158	Augustus	exon	52331	52405	.	-	.	ID=Dca12610.2.exon18;Parent=Dca12610.2
scaffold158	Augustus	exon	53211	53271	.	-	.	ID=Dca12610.2.exon19;Parent=Dca12610.2
scaffold158	Augustus	exon	53486	53586	.	-	.	ID=Dca12610.2.exon20;Parent=Dca12610.2
scaffold158	Augustus	exon	53914	53985	.	-	.	ID=Dca12610.2.exon21;Parent=Dca12610.2