Dca13235.1
Annotation
- 2-exons
- f-1
- sp|Q2R1A9_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g39790#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold1612)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca13235.1 |
5 |
233 |
256 |
64.45 |
229 |
64 |
1e-91
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R1A9_ORYSJ |
907 |
1167 |
1784 |
14.63 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca13235.1 |
126 |
233 |
256 |
19.53 |
108 |
47 |
2e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
447 |
554 |
707 |
15.27 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1612 |
Augustus |
mRNA |
6041 |
7006 |
. |
- |
. |
ID=Dca13235.1;Parent=Dca13235 |
| scaffold1612 |
Augustus |
exon |
6041 |
6408 |
. |
- |
. |
ID=Dca13235.1.exon1;Parent=Dca13235.1 |
| scaffold1612 |
Augustus |
exon |
6604 |
7006 |
. |
- |
. |
ID=Dca13235.1.exon2;Parent=Dca13235.1 |
