Carnation DB

Dca1346.1

Annotation

8-exons
f-1
sp|B9GYT1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_830906#unknown#0F0P0C
sp|B9RG43_RICCO#U2 small nuclear ribonucleoprotein A, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1439000#GO:0030529;GO:0003676#1F0P1C
Repeat List (scaffold1039)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1346.1	1	284	315	68.25	284	75	7e-113
Target_name	Start	End	Length	Cov(%)
sp\|B9GYT1_POPTR	1	283	284	99.64

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1346.1	1	239	315	60.95	239	81	5e-106
Target_name	Start	End	Length	Cov(%)
AT1G09760.1	1	238	249	95.58

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1039	Augustus	mRNA	124806	129416	.	+	.	ID=Dca1346.1;Parent=Dca1346
scaffold1039	Augustus	exon	124806	124887	.	+	.	ID=Dca1346.1.exon1;Parent=Dca1346.1
scaffold1039	Augustus	exon	124997	125037	.	+	.	ID=Dca1346.1.exon2;Parent=Dca1346.1
scaffold1039	Augustus	exon	125334	125463	.	+	.	ID=Dca1346.1.exon3;Parent=Dca1346.1
scaffold1039	Augustus	exon	125569	125774	.	+	.	ID=Dca1346.1.exon4;Parent=Dca1346.1
scaffold1039	Augustus	exon	127584	127745	.	+	.	ID=Dca1346.1.exon5;Parent=Dca1346.1
scaffold1039	Augustus	exon	128638	128688	.	+	.	ID=Dca1346.1.exon6;Parent=Dca1346.1
scaffold1039	Augustus	exon	128868	129047	.	+	.	ID=Dca1346.1.exon7;Parent=Dca1346.1
scaffold1039	Augustus	exon	129321	129416	.	+	.	ID=Dca1346.1.exon8;Parent=Dca1346.1