Carnation DB

Dca13835.1

Annotation

12-exons
f-1
sp|B9IGT0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_577177#GO:0005634;GO:0003677;GO:0008270;GO:0006355;GO:0006351#2F2P1C
AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780
Repeat List (scaffold1646)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca13835.1	2	855	877	52.56	854	50	0
Target_name	Start	End	Length	Cov(%)
sp\|B9IGT0_POPTR	5	898	917	97.49

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca13835.1	2	863	877	45.26	862	46	0
Target_name	Start	End	Length	Cov(%)
AT4G32010.1	3	775	780	99.1

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1646	Augustus	mRNA	32179	43736	.	-	.	ID=Dca13835.1;Parent=Dca13835
scaffold1646	Augustus	exon	32179	32912	.	-	.	ID=Dca13835.1.exon1;Parent=Dca13835.1
scaffold1646	Augustus	exon	33685	33752	.	-	.	ID=Dca13835.1.exon2;Parent=Dca13835.1
scaffold1646	Augustus	exon	33852	33965	.	-	.	ID=Dca13835.1.exon3;Parent=Dca13835.1
scaffold1646	Augustus	exon	36913	36962	.	-	.	ID=Dca13835.1.exon4;Parent=Dca13835.1
scaffold1646	Augustus	exon	38171	38524	.	-	.	ID=Dca13835.1.exon5;Parent=Dca13835.1
scaffold1646	Augustus	exon	38621	38691	.	-	.	ID=Dca13835.1.exon6;Parent=Dca13835.1
scaffold1646	Augustus	exon	38863	39037	.	-	.	ID=Dca13835.1.exon7;Parent=Dca13835.1
scaffold1646	Augustus	exon	39177	39273	.	-	.	ID=Dca13835.1.exon8;Parent=Dca13835.1
scaffold1646	Augustus	exon	39412	40085	.	-	.	ID=Dca13835.1.exon9;Parent=Dca13835.1
scaffold1646	Augustus	exon	40680	40781	.	-	.	ID=Dca13835.1.exon10;Parent=Dca13835.1
scaffold1646	Augustus	exon	40865	40946	.	-	.	ID=Dca13835.1.exon11;Parent=Dca13835.1
scaffold1646	Augustus	exon	43624	43736	.	-	.	ID=Dca13835.1.exon12;Parent=Dca13835.1