Carnation DB

Dca14455.1

Annotation

9-exons
f-1
sp|B9HAX3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_652849#unknown#0F0P0C
Os12t0613500-01 SRP40, C-terminal domain containing protein.
Repeat List (scaffold1686)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca14455.1	450	534	535	12.89	85	82	1e-37
Target_name	Start	End	Length	Cov(%)
sp\|B9HAX3_POPTR	187	271	271	31.36

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca14455.1	257	451	535	19.25	195	50	2e-34
Target_name	Start	End	Length	Cov(%)
Os12t0613500-01	253	441	449	42.09

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1686	Augustus	mRNA	31721	37681	.	+	.	ID=Dca14455.1;Parent=Dca14455
scaffold1686	Augustus	exon	31721	31963	.	+	.	ID=Dca14455.1.exon1;Parent=Dca14455.1
scaffold1686	Augustus	exon	32084	32148	.	+	.	ID=Dca14455.1.exon2;Parent=Dca14455.1
scaffold1686	Augustus	exon	33183	33993	.	+	.	ID=Dca14455.1.exon3;Parent=Dca14455.1
scaffold1686	Augus-PASA	exon	34535	34624	.	+	.	ID=Dca14455.1.exon4;Parent=Dca14455.1
scaffold1686	Augus-PASA	exon	34770	34831	.	+	.	ID=Dca14455.1.exon5;Parent=Dca14455.1
scaffold1686	Augustus	exon	35629	35704	.	+	.	ID=Dca14455.1.exon6;Parent=Dca14455.1
scaffold1686	Augustus	exon	36409	36498	.	+	.	ID=Dca14455.1.exon7;Parent=Dca14455.1
scaffold1686	Augustus	exon	36644	36705	.	+	.	ID=Dca14455.1.exon8;Parent=Dca14455.1
scaffold1686	Augus-PASA	exon	37573	37681	.	+	.	ID=Dca14455.1.exon9;Parent=Dca14455.1