Dca14578.1
Annotation
- 3-exons
- f-1
- sp|Q10JY5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g29035#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1695)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca14578.1 |
1 |
294 |
294 |
37.75 |
294 |
38 |
5e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10JY5_ORYSJ |
219 |
471 |
767 |
32.98 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca14578.1 |
170 |
261 |
294 |
13.26 |
92 |
43 |
2e-17
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
542 |
633 |
1428 |
6.44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1695 |
Augustus |
mRNA |
4306 |
5739 |
. |
- |
. |
ID=Dca14578.1;Parent=Dca14578 |
| scaffold1695 |
Augustus |
exon |
4306 |
4699 |
. |
- |
. |
ID=Dca14578.1.exon1;Parent=Dca14578.1 |
| scaffold1695 |
Augustus |
exon |
5148 |
5178 |
. |
- |
. |
ID=Dca14578.1.exon2;Parent=Dca14578.1 |
| scaffold1695 |
Augustus |
exon |
5280 |
5739 |
. |
- |
. |
ID=Dca14578.1.exon3;Parent=Dca14578.1 |
