Dca14927.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold17148)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca14927.1 |
93 |
273 |
287 |
44.59 |
181 |
71 |
3e-71
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
746 |
926 |
1050 |
17.23 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca14927.1 |
92 |
270 |
287 |
19.16 |
179 |
31 |
5e-16
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1128 |
1298 |
1428 |
11.97 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold17148 |
Augustus |
mRNA |
2101 |
5324 |
. |
- |
. |
ID=Dca14927.1;Parent=Dca14927 |
| scaffold17148 |
Augustus |
exon |
2101 |
2694 |
. |
- |
. |
ID=Dca14927.1.exon1;Parent=Dca14927.1 |
| scaffold17148 |
Augustus |
exon |
5055 |
5324 |
. |
- |
. |
ID=Dca14927.1.exon2;Parent=Dca14927.1 |
