Dca15054.1
Annotation
- 3-exons
- f-3
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1721)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15054.1 |
20 |
447 |
590 |
27.11 |
428 |
36 |
2e-66
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
141 |
564 |
1050 |
40.38 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15054.1 |
266 |
400 |
590 |
9.15 |
135 |
40 |
1e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
642 |
779 |
1428 |
9.66 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1721 |
Augustus |
mRNA |
310 |
4073 |
. |
+ |
. |
ID=Dca15054.1;Parent=Dca15054 |
| scaffold1721 |
Augustus |
exon |
310 |
1118 |
. |
+ |
. |
ID=Dca15054.1.exon1;Parent=Dca15054.1 |
| scaffold1721 |
Augustus |
exon |
1218 |
1918 |
. |
+ |
. |
ID=Dca15054.1.exon2;Parent=Dca15054.1 |
| scaffold1721 |
Augustus |
exon |
3809 |
4073 |
. |
+ |
. |
ID=Dca15054.1.exon3;Parent=Dca15054.1 |
