Carnation DB

Dca15825.1

Annotation

5-exons
f-1
sp|D0R6K1_RAPSA#Restoring pentatricopeptide repeat protein homologue#Raphanus sativus (Radish)#Name=ppr-1#GO:0005488#1F0P0C
Repeat List (scaffold1774)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15825.1	1	428	460	28.91	428	32	3e-52
Target_name	Start	End	Length	Cov(%)
sp\|D0R6K1_RAPSA	97	495	681	58.59

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15825.1	1	405	460	29.56	405	34	4e-67
Target_name	Start	End	Length	Cov(%)
AT1G12700.1	213	591	735	51.56

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1774	Augustus	mRNA	20321	25799	.	+	.	ID=Dca15825.1;Parent=Dca15825
scaffold1774	Augustus	exon	20321	20836	.	+	.	ID=Dca15825.1.exon1;Parent=Dca15825.1
scaffold1774	Augustus	exon	22864	22951	.	+	.	ID=Dca15825.1.exon2;Parent=Dca15825.1
scaffold1774	Augustus	exon	23189	23315	.	+	.	ID=Dca15825.1.exon3;Parent=Dca15825.1
scaffold1774	Augustus	exon	23642	24285	.	+	.	ID=Dca15825.1.exon4;Parent=Dca15825.1
scaffold1774	Augustus	exon	25792	25799	.	+	.	ID=Dca15825.1.exon5;Parent=Dca15825.1