Dca15846.1
Annotation
- 2-exons
- f-1
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold17758)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15846.1 |
139 |
260 |
260 |
26.15 |
122 |
56 |
1e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
964 |
1083 |
1745 |
6.87 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15846.1 |
152 |
260 |
260 |
14.23 |
109 |
34 |
7e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
559 |
665 |
1428 |
7.49 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold17758 |
Augustus |
mRNA |
1585 |
3317 |
. |
- |
. |
ID=Dca15846.1;Parent=Dca15846 |
| scaffold17758 |
Augustus |
exon |
1585 |
1828 |
. |
- |
. |
ID=Dca15846.1.exon1;Parent=Dca15846.1 |
| scaffold17758 |
Augustus |
exon |
2779 |
3317 |
. |
- |
. |
ID=Dca15846.1.exon2;Parent=Dca15846.1 |
