Carnation DB

Dca15939.1

Annotation

6-exons
f-1
sp|A9PAX2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_738036#GO:0016021;GO:0016192#0F1P1C
AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily protein | chr5:23498277-23500128 FORWARD LENGTH=221
Repeat List (scaffold1782)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15939.1	1	189	189	84.65	189	85	6e-95
Target_name	Start	End	Length	Cov(%)
sp\|A9PAX2_POPTR	11	199	199	94.97

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15939.1	3	189	189	80.42	187	73	2e-86
Target_name	Start	End	Length	Cov(%)
AT5G58060.2	13	221	221	94.57

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1782	Augustus	mRNA	69	7626	.	+	.	ID=Dca15939.1;Parent=Dca15939
scaffold1782	Augustus	exon	69	231	.	+	.	ID=Dca15939.1.exon1;Parent=Dca15939.1
scaffold1782	Augustus	exon	1786	1883	.	+	.	ID=Dca15939.1.exon2;Parent=Dca15939.1
scaffold1782	Augustus	exon	5520	5624	.	+	.	ID=Dca15939.1.exon3;Parent=Dca15939.1
scaffold1782	Augustus	exon	5790	5855	.	+	.	ID=Dca15939.1.exon4;Parent=Dca15939.1
scaffold1782	Augustus	exon	6689	6775	.	+	.	ID=Dca15939.1.exon5;Parent=Dca15939.1
scaffold1782	Augustus	exon	7576	7626	.	+	.	ID=Dca15939.1.exon6;Parent=Dca15939.1