Carnation DB

Dca15945.1

Annotation

7-exons
f-1
sp|A5BYQ4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_02s0012g01850#GO:0016020;GO:0005484;GO:0006886;GO:0016192#1F2P1C
AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268
Repeat List (scaffold1782)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15945.1	1	263	275	82.54	263	86	9e-128
Target_name	Start	End	Length	Cov(%)
sp\|A5BYQ4_VITVI	1	262	274	95.62

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca15945.1	1	263	275	73.81	263	77	1e-114
Target_name	Start	End	Length	Cov(%)
AT5G46860.1	1	256	268	95.52

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1782	Augus-PASA	mRNA	35563	38896	.	-	.	ID=Dca15945.1;Parent=Dca15945
scaffold1782	Augus-PASA	exon	35563	35628	.	-	.	ID=Dca15945.1.exon1;Parent=Dca15945.1
scaffold1782	Augus-PASA	exon	36026	36126	.	-	.	ID=Dca15945.1.exon2;Parent=Dca15945.1
scaffold1782	Augus-PASA	exon	36226	36383	.	-	.	ID=Dca15945.1.exon3;Parent=Dca15945.1
scaffold1782	Augus-PASA	exon	36474	36548	.	-	.	ID=Dca15945.1.exon4;Parent=Dca15945.1
scaffold1782	Augus-PASA	exon	37026	37165	.	-	.	ID=Dca15945.1.exon5;Parent=Dca15945.1
scaffold1782	Augus-PASA	exon	37476	37569	.	-	.	ID=Dca15945.1.exon6;Parent=Dca15945.1
scaffold1782	Augus-PASA	exon	38703	38896	.	-	.	ID=Dca15945.1.exon7;Parent=Dca15945.1