Dca16510.1
Annotation
- 2-exons
- f-1
- sp|Q10IB2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35940#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1817)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16510.1 |
7 |
346 |
350 |
58.28 |
340 |
54 |
8e-113
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IB2_ORYSJ |
267 |
647 |
649 |
58.7 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16510.1 |
234 |
329 |
350 |
9.42 |
96 |
35 |
4e-08
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1285 |
1378 |
1401 |
6.7 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1817 |
Augustus |
mRNA |
72416 |
73725 |
. |
+ |
. |
ID=Dca16510.1;Parent=Dca16510 |
| scaffold1817 |
Augustus |
exon |
72416 |
73145 |
. |
+ |
. |
ID=Dca16510.1.exon1;Parent=Dca16510.1 |
| scaffold1817 |
Augustus |
exon |
73403 |
73725 |
. |
+ |
. |
ID=Dca16510.1.exon2;Parent=Dca16510.1 |
