Carnation DB

Dca16562.1

Annotation

5-exons
f-1
sp|D7MB15_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_490928#GO:0003676;GO:0008270#2F0P0C
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting factor | chr4:17486679-17489123 FORWARD LENGTH=536
Repeat List (scaffold1821)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16562.1	1	259	379	52.5	259	77	4e-105
Target_name	Start	End	Length	Cov(%)
sp\|D7MB15_ARALL	102	360	536	48.32

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16562.1	1	259	379	51.45	259	76	1e-104
Target_name	Start	End	Length	Cov(%)
AT4G37120.1	102	360	536	48.32

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1821	Augustus	mRNA	3644	8436	.	+	.	ID=Dca16562.1;Parent=Dca16562
scaffold1821	Augustus	exon	3644	4047	.	+	.	ID=Dca16562.1.exon1;Parent=Dca16562.1
scaffold1821	Augustus	exon	4298	4433	.	+	.	ID=Dca16562.1.exon2;Parent=Dca16562.1
scaffold1821	Augustus	exon	4514	4764	.	+	.	ID=Dca16562.1.exon3;Parent=Dca16562.1
scaffold1821	Augustus	exon	4864	4901	.	+	.	ID=Dca16562.1.exon4;Parent=Dca16562.1
scaffold1821	Augustus	exon	8126	8436	.	+	.	ID=Dca16562.1.exon5;Parent=Dca16562.1