Carnation DB

Dca16782.1

Annotation

6-exons
f-1
sp|B9HEJ3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_562423#unknown#0F0P0C
AT5G16680.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:5467534-5472956 REVERSE LENGTH=1311
Repeat List (scaffold1839)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16782.1	1127	1266	1587	4.03	140	46	5e-29
Target_name	Start	End	Length	Cov(%)
sp\|B9HEJ3_POPTR	196	336	388	36.34

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16782.1	1106	1290	1587	4.22	185	35	5e-22
Target_name	Start	End	Length	Cov(%)
AT5G16680.1	802	992	1311	14.56

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1839	Augustus	mRNA	66548	75242	.	+	.	ID=Dca16782.1;Parent=Dca16782
scaffold1839	Augustus	exon	66548	66633	.	+	.	ID=Dca16782.1.exon1;Parent=Dca16782.1
scaffold1839	Augustus	exon	68708	72037	.	+	.	ID=Dca16782.1.exon2;Parent=Dca16782.1
scaffold1839	Augustus	exon	72129	72347	.	+	.	ID=Dca16782.1.exon3;Parent=Dca16782.1
scaffold1839	Augustus	exon	72454	72578	.	+	.	ID=Dca16782.1.exon4;Parent=Dca16782.1
scaffold1839	Augustus	exon	72671	73070	.	+	.	ID=Dca16782.1.exon5;Parent=Dca16782.1
scaffold1839	Augustus	exon	74639	75242	.	+	.	ID=Dca16782.1.exon6;Parent=Dca16782.1