Carnation DB

Dca17025.1

Annotation

18-exons
f-1
sp|B9HIQ7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_803495#GO:0005488#1F0P0C
AT3G06670.2 | Symbols: | binding | chr3:2105908-2113136 REVERSE LENGTH=886
Repeat List (scaffold1857)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17025.1	83	242	243	48.97	160	75	4e-64
Target_name	Start	End	Length	Cov(%)
sp\|B9HIQ7_POPTR	42	200	878	18.1

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17025.1	82	242	243	44.85	161	68	7e-59
Target_name	Start	End	Length	Cov(%)
AT3G06670.2	41	200	886	18.05

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1857	Augustus	mRNA	17291	32828	.	-	.	ID=Dca17025.1;Parent=Dca17025
scaffold1857	Augustus	exon	17291	17613	.	-	.	ID=Dca17025.1.exon1;Parent=Dca17025.1
scaffold1857	Augustus	exon	20403	20503	.	-	.	ID=Dca17025.1.exon2;Parent=Dca17025.1
scaffold1857	Augustus	exon	20589	20722	.	-	.	ID=Dca17025.1.exon3;Parent=Dca17025.1
scaffold1857	Augustus	exon	20794	20901	.	-	.	ID=Dca17025.1.exon4;Parent=Dca17025.1
scaffold1857	Augustus	exon	21002	21150	.	-	.	ID=Dca17025.1.exon5;Parent=Dca17025.1
scaffold1857	Augustus	exon	21761	21881	.	-	.	ID=Dca17025.1.exon6;Parent=Dca17025.1
scaffold1857	Augustus	exon	22505	22603	.	-	.	ID=Dca17025.1.exon7;Parent=Dca17025.1
scaffold1857	Augustus	exon	23245	23338	.	-	.	ID=Dca17025.1.exon8;Parent=Dca17025.1
scaffold1857	Augustus	exon	23562	23639	.	-	.	ID=Dca17025.1.exon9;Parent=Dca17025.1
scaffold1857	Augustus	exon	24407	24510	.	-	.	ID=Dca17025.1.exon10;Parent=Dca17025.1
scaffold1857	Augustus	exon	25116	25175	.	-	.	ID=Dca17025.1.exon11;Parent=Dca17025.1
scaffold1857	Augustus	exon	25356	25435	.	-	.	ID=Dca17025.1.exon12;Parent=Dca17025.1
scaffold1857	Augustus	exon	25728	25777	.	-	.	ID=Dca17025.1.exon13;Parent=Dca17025.1
scaffold1857	Augustus	exon	26257	26344	.	-	.	ID=Dca17025.1.exon14;Parent=Dca17025.1
scaffold1857	Augustus	exon	26436	26535	.	-	.	ID=Dca17025.1.exon15;Parent=Dca17025.1
scaffold1857	Augustus	exon	29296	29351	.	-	.	ID=Dca17025.1.exon16;Parent=Dca17025.1
scaffold1857	Augustus	exon	30678	30768	.	-	.	ID=Dca17025.1.exon17;Parent=Dca17025.1
scaffold1857	Augustus	exon	32727	32828	.	-	.	ID=Dca17025.1.exon18;Parent=Dca17025.1