Carnation DB

Dca17262.1

Annotation

5-exons
f-1
sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold1874)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17262.1	80	445	475	30.31	366	33	2e-53
Target_name	Start	End	Length	Cov(%)
sp\|Q2QUJ4_ORYSJ	141	564	1050	40.38

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17262.1	269	403	475	10.31	135	36	2e-18
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	647	784	1428	9.66

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1874	Augustus	mRNA	54270	56780	.	+	.	ID=Dca17262.1;Parent=Dca17262
scaffold1874	Augustus	exon	54270	54275	.	+	.	ID=Dca17262.1.exon1;Parent=Dca17262.1
scaffold1874	Augustus	exon	54401	55083	.	+	.	ID=Dca17262.1.exon2;Parent=Dca17262.1
scaffold1874	Augustus	exon	55146	55273	.	+	.	ID=Dca17262.1.exon3;Parent=Dca17262.1
scaffold1874	Augustus	exon	55375	55405	.	+	.	ID=Dca17262.1.exon4;Parent=Dca17262.1
scaffold1874	Augustus	exon	56201	56780	.	+	.	ID=Dca17262.1.exon5;Parent=Dca17262.1