Dca17502.1
Annotation
- 2-exons
- f-1
- sp|Q2QR32_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g28970#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold18925)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17502.1 |
272 |
439 |
451 |
20.39 |
168 |
55 |
1e-44
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QR32_ORYSJ |
791 |
956 |
1412 |
11.75 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17502.1 |
274 |
367 |
451 |
7.53 |
94 |
37 |
6e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
903 |
996 |
1539 |
6.1 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold18925 |
Augustus |
mRNA |
1 |
1534 |
. |
- |
. |
ID=Dca17502.1;Parent=Dca17502 |
| scaffold18925 |
Augustus |
exon |
1 |
955 |
. |
- |
. |
ID=Dca17502.1.exon1;Parent=Dca17502.1 |
| scaffold18925 |
Augustus |
exon |
1137 |
1534 |
. |
- |
. |
ID=Dca17502.1.exon2;Parent=Dca17502.1 |
