Carnation DB

Dca17550.1

Annotation

6-exons
f-1
sp|A5BJD2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_020846#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Os08t0202300-03 Reverse transcriptase domain containing protein.
Repeat List (scaffold1897)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17550.1	1	256	1625	5.16	256	30	7e-16
Target_name	Start	End	Length	Cov(%)
sp\|A5BJD2_VITVI	195	451	1791	14.34

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17550.1	371	1207	1625	15.87	837	31	6e-86
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	606	1390	1539	51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1897	Augustus	mRNA	28753	46359	.	+	.	ID=Dca17550.1;Parent=Dca17550
scaffold1897	Augustus	exon	28753	29398	.	+	.	ID=Dca17550.1.exon1;Parent=Dca17550.1
scaffold1897	Augustus	exon	32680	35684	.	+	.	ID=Dca17550.1.exon2;Parent=Dca17550.1
scaffold1897	Augustus	exon	36035	36168	.	+	.	ID=Dca17550.1.exon3;Parent=Dca17550.1
scaffold1897	Augustus	exon	36893	37026	.	+	.	ID=Dca17550.1.exon4;Parent=Dca17550.1
scaffold1897	Augustus	exon	37635	38184	.	+	.	ID=Dca17550.1.exon5;Parent=Dca17550.1
scaffold1897	Augustus	exon	45951	46359	.	+	.	ID=Dca17550.1.exon6;Parent=Dca17550.1