Carnation DB

Dca18078.1

Annotation

10-exons
f-1
sp|F6H0U7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g04680#unknown#0F0P0C
AT1G22060.1 | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999
Repeat List (scaffold1929)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18078.1	1	1799	1805	51.02	1799	48	0
Target_name	Start	End	Length	Cov(%)
sp\|F6H0U7_VITVI	1	1910	1913	99.84

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18078.1	1125	1799	1805	15.67	675	38	7e-108
Target_name	Start	End	Length	Cov(%)
AT1G22060.1	1269	1993	1999	36.26

seqname	source	feature	start	end	score	strand	frame	group
scaffold1929	Augustus	mRNA	47476	54762	.	+	.	ID=Dca18078.1;Parent=Dca18078
scaffold1929	Augustus	exon	47476	47553	.	+	.	ID=Dca18078.1.exon1;Parent=Dca18078.1
scaffold1929	Augustus	exon	48229	48429	.	+	.	ID=Dca18078.1.exon2;Parent=Dca18078.1
scaffold1929	Augustus	exon	48547	48669	.	+	.	ID=Dca18078.1.exon3;Parent=Dca18078.1
scaffold1929	Augustus	exon	48821	48858	.	+	.	ID=Dca18078.1.exon4;Parent=Dca18078.1
scaffold1929	Augustus	exon	48944	49055	.	+	.	ID=Dca18078.1.exon5;Parent=Dca18078.1
scaffold1929	Augustus	exon	49291	53493	.	+	.	ID=Dca18078.1.exon6;Parent=Dca18078.1
scaffold1929	Augus-PASA	exon	53703	53843	.	+	.	ID=Dca18078.1.exon7;Parent=Dca18078.1
scaffold1929	Augus-PASA	exon	54036	54137	.	+	.	ID=Dca18078.1.exon8;Parent=Dca18078.1
scaffold1929	Augus-PASA	exon	54220	54362	.	+	.	ID=Dca18078.1.exon9;Parent=Dca18078.1
scaffold1929	Augus-PASA	exon	54486	54762	.	+	.	ID=Dca18078.1.exon10;Parent=Dca18078.1