Carnation DB

Dca18433.1

Annotation

8-exons
f-1
sp|F6HMW5_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_08s0056g01070#GO:0016020;GO:0015297;GO:0015238#2F0P1C
Os12t0126000-01 Multi antimicrobial extrusion protein MatE family protein.
Repeat List (scaffold1952)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18433.1	1	468	471	58.81	468	60	9e-167
Target_name	Start	End	Length	Cov(%)
sp\|F6HMW5_VITVI	1	468	485	96.49

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18433.1	3	468	471	50.31	466	51	2e-130
Target_name	Start	End	Length	Cov(%)
Os12t0126000-01	25	490	508	91.73

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1952	Augus-PASA	mRNA	18817	22055	.	-	.	ID=Dca18433.1;Parent=Dca18433
scaffold1952	Augus-PASA	exon	18817	18855	.	-	.	ID=Dca18433.1.exon1;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	19059	19145	.	-	.	ID=Dca18433.1.exon2;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	19501	19619	.	-	.	ID=Dca18433.1.exon3;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	19728	19966	.	-	.	ID=Dca18433.1.exon4;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	20045	20101	.	-	.	ID=Dca18433.1.exon5;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	20212	20298	.	-	.	ID=Dca18433.1.exon6;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	20441	20982	.	-	.	ID=Dca18433.1.exon7;Parent=Dca18433.1
scaffold1952	Augus-PASA	exon	21810	22055	.	-	.	ID=Dca18433.1.exon8;Parent=Dca18433.1