Carnation DB

Dca18542.1

Annotation

5-exons
f-1
sp|B9H231_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_713683#GO:0005622;GO:0005488;GO:0006396#1F1P1C
sp|G7ILD9_MEDTR#Pre-mRNA-splicing factor SYF1#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_2g012310#GO:0005622;GO:0005488;GO:0006396#1F1P1C
Repeat List (scaffold1960)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18542.1	9	406	410	71.21	398	66	2e-160
Target_name	Start	End	Length	Cov(%)
sp\|B9H231_POPTR	436	879	908	48.89

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18542.1	9	406	410	65.12	398	60	4e-143
Target_name	Start	End	Length	Cov(%)
AT5G28740.1	439	887	917	48.96

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1960	Augustus	mRNA	6189	9222	.	+	.	ID=Dca18542.1;Parent=Dca18542
scaffold1960	Augustus	exon	6189	6429	.	+	.	ID=Dca18542.1.exon1;Parent=Dca18542.1
scaffold1960	Augustus	exon	6659	6684	.	+	.	ID=Dca18542.1.exon2;Parent=Dca18542.1
scaffold1960	Augustus	exon	6766	6936	.	+	.	ID=Dca18542.1.exon3;Parent=Dca18542.1
scaffold1960	Augustus	exon	7386	7838	.	+	.	ID=Dca18542.1.exon4;Parent=Dca18542.1
scaffold1960	Augustus	exon	8881	9222	.	+	.	ID=Dca18542.1.exon5;Parent=Dca18542.1