Dca18573.1
Annotation
- 3-exons
- f-1
- sp|Q2QQ28_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g32440#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold1962)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18573.1 |
2 |
490 |
490 |
43.06 |
489 |
44 |
6e-110
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QQ28_ORYSJ |
331 |
744 |
829 |
49.93 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18573.1 |
54 |
164 |
490 |
8.16 |
111 |
36 |
2e-10
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
468 |
580 |
1401 |
8.06 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1962 |
Augustus |
mRNA |
99926 |
102245 |
. |
+ |
. |
ID=Dca18573.1;Parent=Dca18573 |
| scaffold1962 |
Augustus |
exon |
99926 |
100019 |
. |
+ |
. |
ID=Dca18573.1.exon1;Parent=Dca18573.1 |
| scaffold1962 |
Augustus |
exon |
100385 |
100777 |
. |
+ |
. |
ID=Dca18573.1.exon2;Parent=Dca18573.1 |
| scaffold1962 |
Augustus |
exon |
101260 |
102245 |
. |
+ |
. |
ID=Dca18573.1.exon3;Parent=Dca18573.1 |
