Carnation DB

Dca19239.1

Annotation

9-exons
f-1
sp|D7T5E7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VIT_00s0194g00020#GO:0003899;GO:0000166#2F0P0C
AT4G15950.1 | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, Rpb4, core protein | chr4:9040743-9041994 FORWARD LENGTH=205
Repeat List (scaffold20)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19239.1	1	202	210	56.66	202	53	9e-50
Target_name	Start	End	Length	Cov(%)
sp\|D7T5E7_VITVI	1	224	239	93.72

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19239.1	1	202	210	40.95	202	43	4e-37
Target_name	Start	End	Length	Cov(%)
AT4G15950.1	1	202	205	98.53

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold20	Augustus	mRNA	256485	260358	.	+	.	ID=Dca19239.1;Parent=Dca19239
scaffold20	Augustus	exon	256485	256527	.	+	.	ID=Dca19239.1.exon1;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	258255	258326	.	+	.	ID=Dca19239.1.exon2;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	258597	258650	.	+	.	ID=Dca19239.1.exon3;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	258778	258858	.	+	.	ID=Dca19239.1.exon4;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	259057	259168	.	+	.	ID=Dca19239.1.exon5;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	259834	259911	.	+	.	ID=Dca19239.1.exon6;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	259992	260025	.	+	.	ID=Dca19239.1.exon7;Parent=Dca19239.1
scaffold20	Augus-PASA	exon	260110	260178	.	+	.	ID=Dca19239.1.exon8;Parent=Dca19239.1
scaffold20	Augustus	exon	260269	260358	.	+	.	ID=Dca19239.1.exon9;Parent=Dca19239.1