Carnation DB

Dca20661.1

Annotation

28-exons
f-1
sp|B9GFJ5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_829809#GO:0030870;GO:0005524;GO:0004518;GO:0008270#3F0P1C
Os02t0497500-02 Similar to DNA repair protein Rad50.
Repeat List (scaffold210)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20661.1	1	1299	1299	64.66	1299	64	0
Target_name	Start	End	Length	Cov(%)
sp\|B9GFJ5_POPTR	1	1316	1316	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20661.1	1	1299	1299	61.35	1299	61	0
Target_name	Start	End	Length	Cov(%)
AT2G31970.1	1	1316	1316	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold210	Augus-PASA	mRNA	275034	288928	.	-	.	ID=Dca20661.1;Parent=Dca20661
scaffold210	Augus-PASA	exon	275034	275073	.	-	.	ID=Dca20661.1.exon1;Parent=Dca20661.1
scaffold210	Augus-PASA	exon	275198	275326	.	-	.	ID=Dca20661.1.exon2;Parent=Dca20661.1
scaffold210	Augus-PASA	exon	275411	275544	.	-	.	ID=Dca20661.1.exon3;Parent=Dca20661.1
scaffold210	Augustus	exon	275632	275694	.	-	.	ID=Dca20661.1.exon4;Parent=Dca20661.1
scaffold210	Augustus	exon	275996	276146	.	-	.	ID=Dca20661.1.exon5;Parent=Dca20661.1
scaffold210	Augustus	exon	276390	276442	.	-	.	ID=Dca20661.1.exon6;Parent=Dca20661.1
scaffold210	Augustus	exon	276535	276660	.	-	.	ID=Dca20661.1.exon7;Parent=Dca20661.1
scaffold210	Augustus	exon	277376	277700	.	-	.	ID=Dca20661.1.exon8;Parent=Dca20661.1
scaffold210	Augustus	exon	277781	277950	.	-	.	ID=Dca20661.1.exon9;Parent=Dca20661.1
scaffold210	Augustus	exon	278676	278877	.	-	.	ID=Dca20661.1.exon10;Parent=Dca20661.1
scaffold210	Augustus	exon	279373	279581	.	-	.	ID=Dca20661.1.exon11;Parent=Dca20661.1
scaffold210	Augustus	exon	280932	281141	.	-	.	ID=Dca20661.1.exon12;Parent=Dca20661.1
scaffold210	Augustus	exon	282483	282612	.	-	.	ID=Dca20661.1.exon13;Parent=Dca20661.1
scaffold210	Augustus	exon	282692	282821	.	-	.	ID=Dca20661.1.exon14;Parent=Dca20661.1
scaffold210	Augustus	exon	283217	283344	.	-	.	ID=Dca20661.1.exon15;Parent=Dca20661.1
scaffold210	Augustus	exon	284074	284166	.	-	.	ID=Dca20661.1.exon16;Parent=Dca20661.1
scaffold210	Augustus	exon	284269	284480	.	-	.	ID=Dca20661.1.exon17;Parent=Dca20661.1
scaffold210	Augustus	exon	284571	284678	.	-	.	ID=Dca20661.1.exon18;Parent=Dca20661.1
scaffold210	Augustus	exon	284754	284858	.	-	.	ID=Dca20661.1.exon19;Parent=Dca20661.1
scaffold210	Augustus	exon	286066	286236	.	-	.	ID=Dca20661.1.exon20;Parent=Dca20661.1
scaffold210	Augustus	exon	286319	286359	.	-	.	ID=Dca20661.1.exon21;Parent=Dca20661.1
scaffold210	Augustus	exon	286426	286497	.	-	.	ID=Dca20661.1.exon22;Parent=Dca20661.1
scaffold210	Augustus	exon	286647	286875	.	-	.	ID=Dca20661.1.exon23;Parent=Dca20661.1
scaffold210	Augustus	exon	287059	287173	.	-	.	ID=Dca20661.1.exon24;Parent=Dca20661.1
scaffold210	Augustus	exon	287385	287560	.	-	.	ID=Dca20661.1.exon25;Parent=Dca20661.1
scaffold210	Augustus	exon	288229	288396	.	-	.	ID=Dca20661.1.exon26;Parent=Dca20661.1
scaffold210	Augustus	exon	288499	288585	.	-	.	ID=Dca20661.1.exon27;Parent=Dca20661.1
scaffold210	Augustus	exon	288806	288928	.	-	.	ID=Dca20661.1.exon28;Parent=Dca20661.1