Dca20827.1
Annotation
- 4-exons
- f-3
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold21147)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca20827.1 |
1 |
222 |
224 |
65.62 |
222 |
66 |
1e-82
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O23864_9ORYZ |
1005 |
1227 |
1317 |
16.93 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca20827.1 |
11 |
224 |
224 |
33.92 |
214 |
36 |
4e-26
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1132 |
1338 |
1428 |
14.49 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold21147 |
Augustus |
mRNA |
1 |
2170 |
. |
+ |
. |
ID=Dca20827.1;Parent=Dca20827 |
| scaffold21147 |
Augustus |
exon |
1 |
47 |
. |
+ |
. |
ID=Dca20827.1.exon1;Parent=Dca20827.1 |
| scaffold21147 |
Augustus |
exon |
143 |
344 |
. |
+ |
. |
ID=Dca20827.1.exon2;Parent=Dca20827.1 |
| scaffold21147 |
Augustus |
exon |
471 |
1295 |
. |
+ |
. |
ID=Dca20827.1.exon3;Parent=Dca20827.1 |
| scaffold21147 |
Augustus |
exon |
1479 |
2170 |
. |
+ |
. |
ID=Dca20827.1.exon4;Parent=Dca20827.1 |
