Dca21137.1
Annotation
- 4-exons
- f-1
- sp|B9GLM4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_750518#unknown#0F0P0C
- AT1G73240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27542397-27544668 REVERSE LENGTH=519
- Repeat List (scaffold2142)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca21137.1 |
1 |
524 |
524 |
58.01 |
524 |
57 |
2e-151
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9GLM4_POPTR |
1 |
531 |
531 |
100 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca21137.1 |
2 |
523 |
524 |
48.85 |
522 |
49 |
4e-119
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G73240.1 |
3 |
519 |
519 |
99.61 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2142 |
Augustus |
mRNA |
10968 |
15250 |
. |
- |
. |
ID=Dca21137.1;Parent=Dca21137 |
| scaffold2142 |
Augustus |
exon |
10968 |
11441 |
. |
- |
. |
ID=Dca21137.1.exon1;Parent=Dca21137.1 |
| scaffold2142 |
Augustus |
exon |
11846 |
12226 |
. |
- |
. |
ID=Dca21137.1.exon2;Parent=Dca21137.1 |
| scaffold2142 |
Augustus |
exon |
12888 |
13109 |
. |
- |
. |
ID=Dca21137.1.exon3;Parent=Dca21137.1 |
| scaffold2142 |
Augustus |
exon |
14753 |
15250 |
. |
- |
. |
ID=Dca21137.1.exon4;Parent=Dca21137.1 |
