Carnation DB

Dca21438.1

Annotation

8-exons
f-1
sp|B9IE14_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_835084#unknown#0F0P0C
AT5G07910.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:2521937-2523769 REVERSE LENGTH=262
Repeat List (scaffold2167)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca21438.1	1	227	274	60.94	227	71	5e-96
Target_name	Start	End	Length	Cov(%)
sp\|B9IE14_POPTR	1	237	279	84.94

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca21438.1	1	224	274	57.66	224	71	2e-85
Target_name	Start	End	Length	Cov(%)
AT5G07910.1	1	225	262	85.87

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2167	Augus-PASA	mRNA	26009	29078	.	-	.	ID=Dca21438.1;Parent=Dca21438
scaffold2167	Augus-PASA	exon	26009	26245	.	-	.	ID=Dca21438.1.exon1;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	26398	26483	.	-	.	ID=Dca21438.1.exon2;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	26674	26764	.	-	.	ID=Dca21438.1.exon3;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	26936	27021	.	-	.	ID=Dca21438.1.exon4;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	27107	27215	.	-	.	ID=Dca21438.1.exon5;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	27482	27528	.	-	.	ID=Dca21438.1.exon6;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	27804	27873	.	-	.	ID=Dca21438.1.exon7;Parent=Dca21438.1
scaffold2167	Augus-PASA	exon	28980	29078	.	-	.	ID=Dca21438.1.exon8;Parent=Dca21438.1