Carnation DB

Dca21647.1

Annotation

5-exons
f-1
sp|B9MYT9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_594944#unknown#0F0P0C
Os01t0966400-01 Leucine-rich repeat, SDS22 containing protein.
Repeat List (scaffold2185)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca21647.1	5	340	352	40.62	336	40	3e-52
Target_name	Start	End	Length	Cov(%)
sp\|B9MYT9_POPTR	135	471	474	71.09

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca21647.1	5	341	352	37.21	337	38	8e-40
Target_name	Start	End	Length	Cov(%)
Os01t0966400-01	134	463	464	71.12

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2185	Augustus	mRNA	32122	33565	.	-	.	ID=Dca21647.1;Parent=Dca21647
scaffold2185	Augustus	exon	32122	32838	.	-	.	ID=Dca21647.1.exon1;Parent=Dca21647.1
scaffold2185	Augustus	exon	32943	33023	.	-	.	ID=Dca21647.1.exon2;Parent=Dca21647.1
scaffold2185	Augustus	exon	33119	33205	.	-	.	ID=Dca21647.1.exon3;Parent=Dca21647.1
scaffold2185	Augustus	exon	33306	33401	.	-	.	ID=Dca21647.1.exon4;Parent=Dca21647.1
scaffold2185	Augustus	exon	33488	33565	.	-	.	ID=Dca21647.1.exon5;Parent=Dca21647.1